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The Complete Guide to Modern Endpoint Management with Microsoft Intune and Digital Employee Experience

The Evolution of Endpoint Management

The landscape of endpoint management has undergone a dramatic transformation over the past decade. What began as simple Mobile Device Management (MDM) solutions has evolved into sophisticated Unified Endpoint Management (UEM) platforms that address the complexities of today’s hybrid workforce.

From MDM to UEM to Modern Management

The journey started with mobile device management focused primarily on securing smartphones and tablets. As organizations adopted BYOD policies and cloud-first strategies, the need for unified endpoint management software became apparent. This evolution led to platforms that could manage diverse device types (Windows, macOS, iOS, Android, and Chrome OS) from a single console.

Today’s endpoint management solutions go beyond traditional UEM to offer cloud-native architecture, zero-touch deployment capabilities, and comprehensive security and compliance frameworks.They also include modern authentication, conditional access, and application lifecycle management.

A wide-angle photo of a diverse crowd of people standing on a subway platform. Most individuals are looking down at their smartphones or other mobile devices. The scene is dim, lit by fluorescent lights. This image represents the concept of **Mobile Device Management** (MDM) and the widespread use of mobile devices in a public setting.

The market has consolidated around a few key players, with Microsoft Intune emerging as the dominant force in endpoint management software.

Why Modern Endpoint Management Matters

The shift to modern digital workplaces has created unprecedented challenges for IT teams. Traditional on-premises management tools simply can’t address the needs of today’s distributed workforce.

The Business Case for Modern Management

Organizations face a massive migration opportunity accelerated by rapid technological advancement. AI-enabled laptops and increasingly powerful, lightweight devices are expanding how employees work and drive business value. However, millions of devices still rely on legacy management systems that cannot support:

  • Remote and hybrid workers who require secure access from anywhere
  • Seamless onboarding experiences for new employees
  • Streamlined IT operations that reduce administrative overhead
  • Proactive security posture in an increasingly threat-rich environment

Key Drivers for Change

  • Digital Workplace Transformation: The modern digital workplace strategy demands solutions that can adapt to changing work patterns while maintaining security and productivity.
  • Employee Experience Expectations: Today’s workforce expects consumer-grade experiences from their business technology. This includes intuitive self-service capabilities and minimal IT friction.
  • Security and Compliance Requirements: With increasing regulatory requirements and cyber threats, organizations need a robust endpoint security strategy coupled with endpoint compliance capabilities.
  • Cost Optimization: Modern cloud-based solutions offer significant cost advantages over traditional on-premises infrastructure while providing superior capabilities.
  • Device Capability Evolution: Today’s AI-powered end-user devices offer unprecedented capabilities that enable new workflows and productivity gains. However, these devices create complex support challenges that traditional IT tools can’t address. The gap between device capability and IT support capacity widens without modern DEX and endpoint management solutions.

Microsoft Intune: The Market Leader

Microsoft Intune has established itself as the leading unified endpoint management solution, capturing significant market share through its comprehensive feature set and strategic positioning within the Microsoft ecosystem.

‘Day One’ Foundation with Microsoft Intune

Day one for lifecycle management focuses on reducing the total cost of ownership (TCO) with tools that help deploy, configure, and secure devices and applications on new or re-imaged devices. This is where Microsoft Intune excels.

A young woman wearing glasses looks at a computer screen in a dimly lit office. A white icon representing **endpoint management** is overlaid on the image, showing a desktop computer icon with a sphere moving from it to a smartphone icon, symbolizing the flow of data and device control. This image illustrates the concept of **Microsoft Intune** and its role as a market leader in **endpoint management**.

Why Organizations Choose Intune

Intune is a popular choice for several key reasons. Here are a few of the biggest ones.

Accessibility and Cost-Effectiveness: Intune is often bundled with existing Microsoft 365 licenses, making it an attractive option for those already invested in the Microsoft ecosystem. This bundling approach has accelerated adoption and made modern endpoint management accessible to organizations of all sizes.

Comprehensive Platform: As a cloud-native solution, it provides extensive capabilities like mobile device management Intune capabilities for all major platforms; Intune application management with robust app protection policies; Intune compliance policy frameworks that integrate with conditional access; and Microsoft Autopilot for zero-touch device provisioning.

Integration Advantages: Its deep integration with Azure AD, Microsoft 365, and Windows provides unmatched capabilities for Microsoft-centric environments.

Market Position and Adoption

Microsoft Intune’s widespread adoption reflects several market realities. The first is proven scalability thanks to successful deployment across organizations from small businesses to global enterprises. Next is continuous innovation; regular feature updates and enhancements are driven by a cloud delivery model. Last but certainly not least, a strong partner ecosystem has created extensive third-party integrations, and Microsoft Intune alternatives evaluation often leads back to Intune.

Core Intune Capabilities

Understanding what UEM is in the context of Intune requires examining its comprehensive feature set that addresses the full device lifecycle.

Device Management and Enrollment

Intune enrollment supports multiple scenarios. Below are the most common ones.

Microsoft Autopilot

A zero-touch experience for enrolling brand-new Windows devices directly from the factory.

BYOD Enrollment

Allows employees to use their personal devices to securely access corporate resources and data.

Corporate Device Enrollment

For company-owned hardware, providing full control and management over the device.

Bulk Enrollment

Efficiently enrolls a large number of devices at once, ideal for provisioning new corporate fleets.

Adding devices to Intune uses various methods, each optimized for different organizational needs and device types.

Intune Application Management

Intune app management provides comprehensive control over the application lifecycle. This includes:

  • Automated Intune app deployment and updates
  • App protection policies that secure data without requiring device enrollment
  • Microsoft Store for Business integration for streamlined app distribution
  • Win32 app support for legacy applications

Deploy apps with Intune using modern packaging and deployment technologies that ensure reliable installation across diverse environments.

Security and Compliance

Intune device compliance policies ensure devices meet organizational security standards. This includes compliance policy creation and assignment, conditional access integration that blocks non-compliant devices, and endpoint security configurations that implement security baselines. Windows Intune policies also help enforce organizational standards.

Configuration Management

Intune configuration profile capabilities enable standardized device configurations through administrative templates for: Group Policy-like control, custom OMA-URI settings for advanced configurations, Wi-Fi and VPN profiles for seamless connectivity, and certificate deployment for secure authentication.

Setting Up Your Intune Environment

Successful setup of Intune and implementation requires both careful planning and systematic execution. This section provides a simple roadmap for anyone beginning their modern endpoint management journey.

1. Initial Planning & Prerequisites

Before beginning Intune administration, IT leaders should assess their current environment by inventorying existing devices and management solutions.

They also need to define their requirements, establish security, compliance, and user experience goals, and plan a phased migration strategy for transitioning from legacy systems.

Finally, they should prepare their infrastructure to ensure that network connectivity and DNS configurations support Intune.

2. Core Configuration Tasks

Intune administrator roles should be assigned based on organizational structure and security requirements. Key setup activities include:

  • Tenant configuration and basic settings
  • User and group setup in Azure AD
  • Device categories and enrollment restrictions
  • Compliance policies for each platform
  • Configuration profiles for standard settings
  • Application management policies and app catalog

3. Microsoft Autopilot Implementation

Microsoft Autopilot represents the gold standard for device provisioning experiences. Implementation involves:

  • Hardware vendor integration for device registration
  • Autopilot profiles that define deployment behavior
  • Domain join configuration for hybrid scenarios
  • Application and policy assignment for zero-touch deployment

The Digital Employee Experience (DEX) Gap

While Microsoft Intune provides robust endpoint management capabilities, it represents only one layer of the complete digital employee experience solution. Understanding this gap is crucial for organizations seeking to deliver superior employee experiences and frictionless workdays.

What Endpoint Management Provides

Endpoint management tools like Intune excel at:

  • Device provisioning and configuration
  • Policy enforcement and compliance
  • Application deployment and management
  • Security baseline implementation

These foundational capabilities ensure devices are properly configured and secured, but they don’t address the ongoing experience challenges employees face daily.

The DEX Imperative

Day-One vs. Day-Two Operations

While endpoint management platforms like Intune excel at day-one activities—such as device provisioning, initial configuration, and policy deployment—they provide limited visibility into day-two operations. Day two challenges include performance optimization, user experience issues, application conflicts, and resource management problems.

Digital employee experience management addresses this gap between device management and user satisfaction. A specialized DEX platform complements Intune by providing:

Real-time Visibility: Unlike traditional endpoint monitoring software, DEX solutions provide continuous insight into actual user experiences, not just device health metrics.
This monitoring captures comprehensive performance data, including CPU utilization, memory consumption, disk I/O patterns, network latency, application response times, and user session behavior. Advanced DEX platforms can detect performance degradation patterns before they impact productivity, automatically correlate system events with user experience issues, and provide granular visibility into resource contention that traditional monitoring tools miss.


Proactive Issue Resolution: Digital employee experience tools can identify and resolve experience issues before they impact productivity, going beyond the reactive troubleshooting capabilities of traditional management platforms.

User-Centric Metrics: Employee experience software focuses on metrics that matter to users—application responsiveness, login times, and overall system performance—rather than just technical compliance.

Alt text: An office workspace filled with employees sitting at desks with multiple computer monitors. The photo is taken from a slight distance and has a warm, vintage-like filter. The hanging lights are bokeh and there's a laptop with the ControlUp logo on one of the desks.

The Complete Solution Architecture

A ‘complete’ digital workplace architecture requires both endpoint management (like Intune) and digital employee experience layers. This dual approach ensures that while devices are properly managed and secured, the actual employee experience is continuously monitored and optimized through specialized DEX capabilities.

Technical Integration in Practice

Modern DEX platforms integrate directly with Intune through APIs and or UI extensions, creating seamless workflows that enhance existing management capabilities. When DEX tools detect vulnerabilities or performance issues on endpoints, they can automatically trigger Intune policy updates, initiate remediation scripts, or create deployment packages for targeted fixes.

As an example, ControlUp’s Enrich browser extension demonstrates this integration by providing real-time performance data and automated remediation capabilities directly within the Intune console, allowing IT teams to troubleshoot and resolve issues without switching between platforms.

This integration extends to ITSM and ITAM systems, ensuring that all endpoint activities are properly documented and tracked for compliance purposes. The result is a unified management experience where endpoint health data flows seamlessly between platforms.

Why Traditional Endpoint Monitoring Falls Short

Endpoint monitoring solutions typically focus on infrastructure metrics instead of user experience. Traditional approaches provide:

  • Device health statistics
  • Network connectivity status
  • Application installation success rates
  • Policy compliance reporting

But these metrics don’t correlate with employee satisfaction or productivity. A device can be “healthy” technically while providing frustrating user experiences due to application performance issues, slow login times, or resource contention. Digital employee experience software bridges this gap through user-centric metrics and proactive issue resolution.

Best Practices and Implementation

Successful modern endpoint management requires more than just technology deployment. Organizations must adopt proven practices that ensure both technical success and positive user experiences.

Deployment Strategy

Phased Implementation: egin with pilot groups to validate configurations and gather feedback before broad deployment. This approach allows for refinement of policies and procedures while minimizing organizational disruption.

Change Management: Investment in user training and communication ensures smooth adoption. Employee engagement platforms can be valuable for communicating changes and gathering feedback during transitions.

Testing and Validation: Comprehensive testing of Intune compliance policies, application deployments, and configuration profiles prevents production issues and ensures consistent experiences.

Alt text: A focused IT professional, a woman with dark hair, works at a multi-monitor computer station in a data center or tech environment. Her screens display lines of code and technical diagrams, symbolizing enhanced security and a proactive security posture.

Security Considerations

An endpoint security strategy should balance security requirements with user experience. This means:

    1. Implementing conditional access policies that provide security without creating friction.
    2. Using application protection policies that secure data while maintaining productivity.
    3. Creating compliance frameworks that are achievable and clearly communicated.

Additionally, advanced DEX platforms help enhance security posture by detecting vulnerabilities in real-time, often before traditional patch management systems identify them. This proactive approach enables immediate remediation through automated workflows that can deploy patches, update configurations, and restart services while maintaining detailed audit trails. This is valuable for compliance frameworks that require rapid response to security threats and comprehensive documentation of remediation activities.

Performance Optimization

While Intune handles device management, digital experience monitoring tools are essential for ensuring optimal performance. These solutions provide:

  • Real-time performance monitoring to identify bottlenecks
  • User experience analytics to understand the actual impact of changes
  • Proactive alerting when experience metrics fall below acceptable thresholds

Advanced Management Capabilities

Modern endpoint management extends beyond basic device configuration and policy enforcement. As organizations scale their digital workplaces, they require sophisticated capabilities that complement foundational platforms like Microsoft Intune.

Remote Management and Support

Remote management capabilities have become essential for supporting distributed workforces. While Microsoft Intune provides basic remote actions like device wipe and lock, comprehensive remote support requires additional tools that can:

  • Provide real-time screen sharing and remote assistance without requiring pre-installed software
  • Enable command-line access for advanced troubleshooting scenarios
  • Offer session shadowing capabilities for training and support purposes
  • Support cross-platform remote control across Windows, macOS, and mobile devices

These capabilities bridge the gap between Intune’s management features and the hands-on support that end users sometimes require, especially during complex troubleshooting scenarios.

Integration and Extensibility

Endpoint management solutions are increasingly required to integrate with broader IT infrastructures. Modern organizations typically require:

  • ITSM platform integration for automated ticket creation and updates
  • ITAM system connectivity for accurate asset tracking and compliance reporting
  • Security tool integration for coordinated threat response and remediation
  • API-based extensibility that allows custom workflow development

This integration capability ensures that endpoint management operates in conjunction with other IT operations, becoming part of a comprehensive IT operations ecosystem. Microsoft Intune provides some integration capabilities, but organizations often need additional tools to create seamless workflows across their entire technology stack.

Resource Optimization at Scale

Endpoint management tools must address resource allocation and optimization, particularly in environments with hundreds or thousands of devices:

  • Resource utilization monitoring to identify overprovisioned or underutilized systems
  • Capacity planning insights based on actual usage patterns rather than theoretical specifications
  • Performance optimization recommendations that can be applied systematically across device fleets
  • Cost optimization guidance for cloud resources and software licensing

While Intune handles device configuration, understanding actual resource consumption and optimization opportunities requires deeper monitoring and analytics capabilities.

Bulk Operations and Mass Remediation

Large-scale endpoint management operations require capabilities beyond individual device management:

  • Mass healing operations that can resolve common issues across hundreds of devices simultaneously
  • Bulk configuration changes that go beyond traditional policy deployment
  • Systematic troubleshooting that can identify and resolve patterns of issues across device populations
  • Automated remediation workflows that can execute complex multi-step processes without manual intervention

These capabilities become super important during major system updates, security incidents, or when addressing widespread performance issues that affect large portions of the device fleet.

Combining all of the advanced capabilities above with foundational platforms like Microsoft Intune creates a comprehensive approach to modern endpoint management. Solutions like ControlUp exemplify this approach by providing these enterprise-scale capabilities while maintaining seamless integration with existing Intune deployments.

Ongoing Management

Intune management requires continuous attention to policy refinement based on user feedback and security requirements, application lifecycle management, and compliance monitoring. Providing user support through self-service capabilities and clear documentation is also critical for long-term success.

The Future of Endpoint Management

The endpoint management landscape continues to evolve, driven by changing work patterns, emerging technologies, and shifting user expectations.

Emerging Trends

Three major trends are emerging that you need to be aware of to stay one step ahead.

    1. AI-Powered Management: Future endpoint management solutions will leverage artificial intelligence for predictive issue resolution, automated policy optimization, and enhanced security threat detection.
    2. Zero Trust Architecture: Modern endpoint security is moving toward zero-trust models that verify every access request regardless of device location or user identity.
    3. Enhanced DEX: The convergence of endpoint management and digital employee experience management will create more holistic solutions that optimize both device functionality and user satisfaction.

Microsoft’s Evolving Roadmap

Microsoft Intune continues to evolve with regular feature updates addressing enhanced Autopilot capabilities for even simpler device deployment, improved application management, advanced analytics and reporting, and deeper integration with Microsoft 365 and security tools.

The Role of Specialized Solutions

While unified endpoint management platforms like Intune provide comprehensive device management capabilities, specialized solutions remain essential for complete digital workplace success.

Digital Employee Experience platforms complement endpoint management by providing the real-time visibility and proactive support capabilities that traditional management platforms cannot deliver. Additionally, certain industries require specialized management capabilities that may not be available in general-purpose UEM solutions.

Paving the Way for Better Workdays

Microsoft Intune represents the current state of the art in modern endpoint management, providing organizations with the tools needed to manage devices in today’s hybrid work environment. Its comprehensive feature set, cloud-native architecture, and deep Microsoft ecosystem integration make it the natural choice for organizations seeking to modernize their device management capabilities.

However, delivering exceptional digital workplace experiences requires more than foundational device management; it demands real-time visibility and proactive support capabilities that complement Intune’s strengths. The ControlUp ONE digital employee experience platform bridges this gap, providing comprehensive monitoring, intelligent troubleshooting, and automated remediation that transforms good endpoint management into exceptional experiences.

Performance & Experience in Harmony

Successful digital workplace transformation requires both layers working in harmony. While Intune provides the foundation (keeping devices properly configured, secured, compliant), workers demand continuous optimization of the actual user experience. Organizations that recognize this dual requirement invest in solutions that monitor app performance, detect issues instantly, and automatically resolve common problems without manual intervention.

This proactive IT management approach and DEX monitoring elevates IT from a reactive support function into a strategic enabler of business productivity and employee satisfaction.

DEX Switch 2
DEX Switch 3
Why ControlUp with Microsoft Intune

Adopting ControlUp with Microsoft Intune exemplifies this complete approach. The Enrich browser extension brings real-time performance data, automated remediation capabilities, and user experience insights directly into the familiar Intune interface. IT teams can troubleshoot issues, deploy fixes, and optimize performance without switching between platforms or disrupting their established workflows.

This unified experience ensures that while Intune handles core device management, ControlUp provides the ongoing visibility and proactive support that keeps employees productive and satisfied.

The future belongs to organizations that recognize endpoint management as just one component of a broader digital employee experience strategy. By implementing both foundational device management through Intune and advanced DEX through ControlUp, IT teams can finally deliver the seamless, productive experiences that employees expect and deserve. More than managing devices, it’s about enabling human potential at work.

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Integrating DEX with Intune



Thinking about taking your Microsoft Intune deployment to the next level? You’ve done the hard work of modernizing your endpoint management. Now, let’s talk about how to complete the picture by adding a layer of real-time visibility and proactive IT support to ensure a superior digital employee experience every day.

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